SIABO

Semantic Information Access through Biomedical Ontologies

Publications

Summarization by domain ontology navigation. / Andreasen, Troels ; Bulskov, Henrik., I: International Journal of Intelligent Systems, Vol. Volume 27, Nr. Issue 4, 15.04.2012.

Ontology-based retrieval of bio-medical information based on microarray text corpora. / Hansen, Kim Allan ; Zambach, Sine ; Have, Christian Theil., I: ESSLLI 2010 Student Session. Springer Publishing Company, 2012. (Lecture Notes in Computer Science).

2011

On Type Coercion in Compositional and Lexical Semantics, Jensen, P. A. & Vikner, C.2011 I: Mathematics of Language (MOL 12). Kanazawa, M., Kornai, A., Kracht, M. & Seki, H. (red.). Heidelberg : Springers. 108-125. (Lecture Notes in Computer Science; 6878).

Querying Class-Relationship Logic in a Metalogic Framework / J. Fischer Nilsson, FQAS 2011: 96-107, LNAI 7022, 2011

The OntoGram-Approach to Text Processing and Semantic Relation Spotting for Indexing. / Andreasen, Troels ; Bulskov, Henrik ; Lassen, Tine ; Jensen, Per Anker., I: 2011 Eighth International Conference on Fuzzy Systems and Knowledge Discovery (FSKD 2011) . red. / Y.Ding. IEEE Press, 2011.

CAOS: Construction and Validation of Terminological Ontologies, Erdman Thomsen, H. & Madsen, B. N.2011I : L S P Journal.2, 2, s. 34-39.

A Semantics-Based Approach to Retrieving Biomedical Information. / Andreasen, Troels ; Bulskov, Henrik ; Lassen, Tine ; Zambach, Sine ; Jensen, Per Anker ; Thomsen, Hanne Erdman ; Madsen, Bodil Nistrup ; Nilsson, Jørgen Fischer ., I: Lecture Notes in Computer Science, Nr. 7022, 2011, s. 108-118.

Extracting Conceptual Feature Structures from Text. / Andreasen, Troels ; Bulskov, Henrik ; Lassen, Tine ; Jensen, Per Anker., I: Lecture Notes in Computer Science, Vol. 6804, 01.06.2011, s. 396-406.

Querying Class-Relationship Logic in a Metalogic Framework / J. Fischer Nilsson, FQAS 2011: 96-107, LNAI 7022, 2011

Flexible Query Answering Systems, 9th International Conference, FQAS 2011 Ghent, Belgium, October 26-28, 2011 Proceedings. / Christiansen, Henning (Redaktør) ; De Tré, Guy (Redaktør) ; Yazici, Adnan (Redaktør) ; Zadrozny, Slawomir (Redaktør) ; Andreasen, Troels (Redaktør) ; Larsen, Henrik Legind., Springer, 2011. (Lecture Notes In Artificial Intelligence).

A Lexical Framework for Semantic Annotation of Positive and Negative Regulation Relations in Biomedical Pathways. / Zambach, Sine ; Lassen, Tine., 2011. Paper presented at 4th International Symposium on Semantic Mining in Biomedicine, Hinxton, Storbritannien.

An approach to summarization through domain ontologies. / Andreasen, Troels ; Bulskov, Henrik., I: WCONSC 2011 - World Conference on Soft Computing, Proceedings. 2011.

From Concept Models to Conceptual Data Models, Madsen, B. N. & Odgaard, A. E. 2011 I: Terminology and Knowledge Engineering Conference 2010 - Proceedings. Bhreathnack, U. & De Barra-Cusack, F. (red.). Dublin : Fiontar DCUs. 537-544.

2010

The Terminological Approach to Ontology Building, Madsen, B. N. & Erdman Thomsen, H.2010

Using Corporate Social Responsibility strategy with a climate focus for Enterprise Systems. / Zambach, Sine ; Holst, Philip ; Francker, Zenia Worm., 2010. Paper presented at RUC Sunrice Tripple C Conference, Roskilde, Danmark.

Logical knowledge representation of regulatory relations in biomedical pathways. / Zambach, Sine ; Hansen, Jens Ulrik., I: ITBAM 2010: 1st International Conference on Information Technology in Bio- and Medical Informatics. red. / S.Khuri ; L.Lhotská ; N.Pisanti. Springer, 2010. s. 186-200 (Lecture Notes in Computer Science; 6266).

2009

On Conceptual Indexing for Data Summarization. / Bulskov, Henrik ; Andreasen, Troels., I: Proceedings of the Joint 2009 International Fuzzy Systems Association World Congress and 2009 European Society of Fuzzy Logic and Technology Conference. red. / J. P.Carvalho ; D.Dubois ; U.Kaymak ; M. C.Sousa. European Society for Fuzzy Logic and Technology, 2009. s. 1618-1625.

Towards ontology based search and knowledgesharing using domain ontologies. / Zambach, Sine., 2009. Paper presented at 2nd Workshop on 3rd Generation Enterprise Resource Planning Systems, København, Danmark.

SIABO : Semantic Information Access through Biomedical Ontologies. / Andreasen, Troels ; Zambach, Sine ; Lassen, Tine ; Nilsson, Jørgen Fischer ; Madsen, Bodil Nistrup ; Jensen, Per Anker ; Thomsen, Hanne Erdman ; Szymczak, Bartlomiej Antoni., I: KEOD 2009: 1st International Conference on Knowledge Engeneering and Ontology Development. red. / Jan L. G.Dietz. Institute for Systems and Technologies of Information, Control and Communication, 2009. s. 171-176.

Ontologies vs. Classification Systems, Madsen, B. N. & Erdman Thomsen, H.13 maj 2009I : NEALT (Northern European Association of Language Technology) Proceedings Series.4, s. 27-32.6 s.

A Formal Framework on the Semantics of Regulatory Relations and Their Presence as Verbs in Biomedical Texts. / Zambach, Sine, I: Lecture Notes in Computer Science, 2009, s. 443-452.

Text summarization using ontologies. / Bulskov, Henrik ; Andreasen, Troels., I: Data Mining Applications using Ontologies in Biomedicine. red. / MihailPopescu ; DongXu. Norwood, MA : Artech House, 2009. s. 163-182.

Conceptual Indexing of Text Using Ontologies and Lexical Resources. / Andreasen, Troels ; Bulskov, Henrik ; Jensen, Per Anker ; Lassen, Tine., I: Lecture Notes in Computer Science, Nr. 5822, 2009, s. 323-332.

Insulinontologi til søgeprojekt, Madsen, B. N. , Erdman Thomsen, H. , Lassen, T. & Zambach, S. 2009

Logical implications for regulatory relations represented by verbs in biomedical texts. / Zambach, Sine., 2009. Poster session presented at International Conference on Biomedical Ontology, Buffalo, USA.

Conceptual querying through ontologies. / Andreasen, Troels ; Bulskov, Henrik., I: Fuzzy Sets and Systems, Nr. 15, 2009, s. 2159-2172.

Consistency and Clarity in Chemical Concepts : How to Achieve a Codified Chemical Terminology - A Pilot Study. / Damhus, Ture ; Olesen Larsen, Peder ; Madsen, Bodil Nistrup ; Zambach, Sine., I: Chemistry International, Vol. 31, Nr. 5, 2009, s. 6-11.

CAOS: A tool for the Construction of Terminological Ontologies, Madsen, B. N. & Erdman Thomsen, H.2009 I: Proceedings of the 17th Nordic Conference of Computational Linguistics NODALIDA 2009. Jokinen, K. & Bick, E. (red.). s. 279-282. (NEALT Proceedings Series).

ONTOGRABBING: Extracting Information from Texts Using Generative Ontologies / J. Fischer Nilsson, B. A. Szymczak, P. Anker Jensen, FQAS 2009: 275-286, 2009.

Terminological concept modelling and conceptual data modelling, Madsen, B. N. & Erdman Thomsen, H.2009I : International Journal of Metadata, Semantics and Ontologies.4, 4, s. 239-249.

Flexible Query Answering Systems : 8th International Conference, FQAS 2009, Roskilde, Denmark, October 2009, Proceedings. / Andreasen, Troels (Redaktør) ; Yager, Ronald R. (Redaktør) ; Bulskov, Henrik (Redaktør) ; Christiansen, Henning (Redaktør) ; Larsen, Henrik Legind (Redaktør)., Berlin-Heidelberg-New York : Springer, 2009. 676 s. (Lecture Notes in Computer Science; 5822).

On deriving data summarization through ontologies to meet user preferences. / Andreasen, Troels ; Bulskov, Henrik., I: Advances in Data Management. Vol. 223/2009 Springer, 2009. s. 67-87 (Studies in Computational Intelligence).

2008

Ontological Summaries. / Bulskov, Henrik ; Andreasen, Troels ; Terney, Thomas Vestskov., I: Managing Ontologies and Lexical Resources. red. / Bodil NistrupMadsen ; Hanne ErdmannThomsen. Litera, 2008. s. 219-230.

Terminological Principles used for Ontologies, Madsen, B. N. & Erdman Thomsen, H.2008 I: Managing Ontologies and Lexical Resources. Nistrup Madsen, B. & Erdman Thomsen, H. (red.). Literas. 107-122.

A Common Framework for Board Games and Argumentation Games / J. Eriksson Lundström, J. Fischer Nilsson, A. Hamfelt, EJC 2008: 309-320, 2008.

On Reducing Relationships to Property Ascriptions / J. Fischer Nilsson, EJC 2008: 245-252, 2008.

Ontological summaries through hierarchical clustering. / Andreasen, Troels ; Bulskov, Henrik ; Terney, Thomas Vestskov., I: Lecture Notes in Computer Science, 2008, s. 497-507.

Managing Ontologies and Lexical Ressources: 8th International Conference on Terminology and Knowledge Engineering. TKE 2008, Madsen, B. N. (red.) & Erdman Thomsen, H. (red.)2008 København : Litera. 334 s.

Query Expansion by Taxonomy. / Andreasen, Troels ; Styltsvig, Henrik Bulskov., I: Handbook of Research on Fuzzy Information Processing in Databases. red. / JoséGalindo. Hershey, PA : Idea Group Publishing, 2008. s. 325-351.

2007

On Browsing Domain Ontologies for Information Base Content. / Andreasen, Troels ; Styltsvig, Henrik Bulskov., I: Lecture Notes in Computer Science, Vol. 4529, 2007, s. 135-144.

Perspectives on Ontology-based Querying. / Andreasen, Troels ; Bulskov, Henrik ; Knappe, Rasmus., I: International Journal of Intelligent Systems, Vol. 22, Nr. 7, 2007, s. 739-761.

Ontologies and Indeterminacy, Madsen, B. N.2007 I: Indeterminacy in terminology and LSP. Antia, B. E. (red.). Amsterdam : John Benjamins Publishing Companys. 181-198. (Terminology and Lexicography Research and Practice; 8).

Conceptual Summaries as Query Answers. / Styltsvig, Henrik Bulskov ; Andreasen, Troels ; Terney, Thomas Vestskov., I: North American Fuzzy Information Processing Society: NAFIPS '07. Annual Meeting of the24-27 June 2007. Electrical Engineering/Electronics, Computer, Communications and Information Technology Association, 2007. s. 458-462 (IEEE Conference Proceeding).

Legal rules and argumentation in a metalogic framework / J. Eriksson Lundström, J. Fischer Nilsson, A. Hamfelt, JURIX 2007: 39-48, 2007.

2006

Ontological Constitutions for Classes and Properties / J. Fischer Nilsson, ICCS 2006: 37-53, LNAI 4068, 2006.

Flexible Query Answering Systems : 7th International Conference, FQAS 2006, Milan, Italy, June 7-10, 2006, Proceedings. / Larsen, Henrik Legind (Redaktør) ; Pasi, Gabriella (Redaktør) ; Ortiz-Arroyo, Daniel (Redaktør) ; Andreasen, Troels (Redaktør) ; Christiansen, Henning (Redaktør)., Heidelberg : Kluwer Academic Publishers, 2006. 720 s. (Lecture Notes in Artificial Intelligence).

An Ontology Based View on Prepositional Senses. / Lassen, Tine., I: Proceedings of the Third ACL-SIGSEM Workshop on Prepositions. Association for Computational Linguistics, 2006. s. 45-50.

An Ontology-Based Approach to Disambiguation of Semantic Relations. / Lassen, Tine ; Terney, Thomas Vestskov., I: Proceedings of the workshop on Learning Structured Information in Natural Language Applications. Association for Computational Linguistics, 2006.

Ontology-based Disambiguation of the Semantic Relation between the Heads of two Noun Phrases. / Lassen, Tine ; Terney, Thomas Vestskov., I: Proceedings of the Nineteenth International Florida Artificial Intelligence Research Society Conference. AAAI Press, 2006. s. 791-793.